#!/bin/bash
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=GGA --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=GAG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=AGG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=AGxAG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=GGxGG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=AGGA --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=GGAG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=GAGG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=AGxAGG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=AGGxGG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=AGGAG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=GGAGG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
./motif --read --input=ecoli.fna --annotation=verified_cleaned --pattern=AGGAGG --freq=freq.txt && cat freq.txt >> pattern_freq.txt
